The full record

The complete
research record.

Every peer-reviewed publication, collaboration, conference contribution and press mention behind Logic Byte — laid out in full, filterable by theme and linked to source. This is the record you can read, cite and verify.

In production at ETH Zürich Ongoing trials at NTU 20+ peer-reviewed publications Featured by CNA & The Straits Times
Peer-reviewed publications

Published & cited

Twenty-plus peer-reviewed papers in AI-driven imaging, image-based diagnostics and quantitative cell imaging, cited more than 1,200 times. Filter by theme.

Augmented reality microscopy: label-free pseudo-DAPI nuclear staining from DIC images using deep neural networks
D.S. Jokhun et al. — Logic Byte / NUS
Manuscript in preparationLabel-free imagingVirtual staining
1
K. Jiang, S.B. Lim, J. Xiao, D.S. Jokhun et al.
Advanced Science · 2023
Cell mechanicsCancer biology
DOI ↗
2
Y. Belotti, D.S. Jokhun, V.L.M. Valerio, T.W. Chong, C.T. Lim
AIP Advances · 2023
FeaturedAI & MLCancer diagnostics
DOI ↗
3
D.S. Jokhun, Y. Belotti, C.T. Lim
APL Bioengineering · 2021
FeaturedAI & MLSingle-cell classification
DOI ↗
4
S. Venkatachalapathy, D.S. Jokhun, M. Andhari, G.V. Shivashankar
Scientific Reports · 2021
AI & MLChromatin biomarkers
DOI ↗
5
K. Jiang, D.S. Jokhun, C.T. Lim
Journal of Biomechanics · 2021
AI & MLMicrofluidics
DOI ↗
6
S. Venkatachalapathy, D.S. Jokhun, G.V. Shivashankar
Molecular Biology of the Cell · 2020
Cell mechanics
DOI ↗
8
K. Damodaran, M. Crestani, D.S. Jokhun, G.V. Shivashankar
PLoS ONE · 2019
AI & MLDisease biomarkers
DOI ↗
10
K. Damodaran, S. Venkatachalapathy, F. Alisafaei, D.S. Jokhun et al.
Molecular Biology of the Cell · 2018
Cell mechanics
DOI ↗
11
D.S. Jokhun, Y. Shang, G.V. Shivashankar
Biophysical Journal · 2018
Cell mechanics
DOI ↗
12
M. Monticelli, D.S. Jokhun, D. Petti, G.V. Shivashankar, R. Bertacco
Lab on a Chip · 2018
Cell mechanics
DOI ↗
13
D.S. Jokhun, A. Mitra, S. Venkatachalapathy, P. Ratna, Y. Wang, G.V. Shivashankar
PNAS · 2017
Nuclear mechanics
DOI ↗
14
A.V. Radhakrishnan, D.S. Jokhun, S. Venkatachalapathy, G.V. Shivashankar
Biophysical Journal · 2017
Nuclear mechanics
DOI ↗
15
E. Makhija, D.S. Jokhun, G.V. Shivashankar
PNAS · 2016
Nuclear mechanics
DOI ↗
Collaborations

Projects & partnerships

Collaborative work spanning commercial deployments and academic research partnerships. Industrial and semiconductor projects are listed without institutional attribution where confidentiality agreements apply.

Industry & commercial
C1
Reinforcement learning for iterative multi-parameter auto-tuning of an imaging device
2025
Reinforcement learningAutonomous systemsIndustrial
C2
Framework for real-time, low-compute processing of live image streams
2024
Real-time processingEmbedded systems
C3
Computer-vision-based wafer inspection and defect detection
2023
Defect detectionSemiconductor
C4
Generative AI for augmented imaging on a commercial optical instrument — ETH Zürich (commercial deployment)
2022
Vision generative AICommercial deploymentETH Zürich
Academic research
C5
Mechano-genomic score as single-cell biomarkers for tumour progression
2021
AI & MLBiomarkersCancer
C6
Machine-learning-based pH imaging and detection of individual cancer cells
2020
AI & MLCancer diagnostics
C7
Single-cell analysis of fibroblast behaviour in engineered 3D tumour microenvironments
2019
Cell mechanicsImage analysis
C8
Localized mechanical stimulation of single cells with engineered spatio-temporal profile
2018
Cell mechanicsSingle-cell
C9
Nuclear reprogramming in the absence of exogenous biochemical factors by lateral confinement
2018
Nuclear mechanicsMechanobiology
C10
Chromatin condensation and shape-dependent transcriptional responses to cell compression
2018
Cell mechanicsChromatin organisation
Conference participation

Talks & symposia

Presentations at international conferences in genomics, AI and mechanobiology across Singapore and Europe.

P1
International Conference on Genomes and AI
Singapore · October 2019
ConferenceSingapore
P2
MBI 10th Anniversary Conference
Singapore · November 2018
ConferenceSingapore
P3
European Molecular Biology Organization (EMBO)
Berlin, Germany · April 2018
InternationalEMBO
P4
International Symposium on Mechanobiology (ISMB)
Singapore · December 2017
ConferenceSingapore
P5
Biophysical Society (BPS)
Singapore · September 2016
ConferenceSingapore
P6
European Molecular Biology Organization (EMBO)
Italy · October 2015
InternationalEMBO
Media & press

In the press

Coverage of the founding research in AI-driven imaging — from Singapore's flagship broadcast and print media to specialist AI programmes and international wires.

M1
Channel News Asia · Singapore · 2019
BroadcastDocumentary
Link ↗
M2
The Straits Times · Singapore · 2021
Print / digital
Link ↗
M5
CGTN · International · 2021
Broadcast / digital
Link ↗
M6
LabelFlow · AI Stories · France · 2022
Interview · AI media
Link ↗
M8
The Training and Employment Magazine · Mauritius · 2022
Print / digital
Link ↗
Book chapter

Book chapter

B1
A. Kumar, E. Makhija, A.V. Radhakrishnan, D.S. Jokhun, G.V. Shivashankar
Mechanobiology in Health and Disease · Elsevier · 2018 · pp. 55–76
Nuclear mechanicsBook chapter
DOI ↗

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